{ "_id": "6a5787fdff0138dec5d71378", "Type": "Package", "Package": "ospsuite", "Title": "R package to manipulate OSPSuite Models", "Version": "12.4.3.9015", "Authors@R": "c(person(\"Open-Systems-Pharmacology Community\", role = c(\"cph\", \"fnd\")),\nperson(\"Michael\", \"Sevestre\", role = c(\"aut\", \"cre\"), email = \"michael@design2code.ca\"),\nperson(\"Pavel\", \"Balazki\", role = \"aut\"),\nperson(\"Juri\", \"Solodenko\", role = \"aut\", comment = c(ORCID = \"0000-0001-6922-588X\")),\nperson(\"Indrajeet\", \"Patil\", , \"patilindrajeet.science@gmail.com\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-1995-6531\", Twitter = \"@patilindrajeets\")),\nperson(\"Felix\", \"MIL\", role = \"aut\"))", "Description": "The ospsuite-R package provides the functionality of\nloading, manipulating, and simulating the simulations created\nin the Open Systems Pharmacology Software tools PK-Sim and\nMoBi.", "License": "GPL-2 | file LICENSE", "URL": 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A 3rd optional entry 'units' will be defined if the parameter 'addUnits' is set to 'TRUE'. Note: Units are only available for .NET object of type 'ParameterValueWithUnit'", "topics": [ ".parameterValueListFrom" ] }, { "page": "dot-parseDimensionsXML", "title": "parse OSPSuite.Dimensions.xml containing dimensions and units", "topics": [ ".parseDimensionsXML" ] }, { "page": "dot-savePKAnalysesToCSV", "title": "Saves the pK-analyses to csv file", "topics": [ ".savePKAnalysesToCSV" ] }, { "page": "dot-savePopulationToCSV", "title": "Saves the population to csv file", "topics": [ ".savePopulationToCSV" ] }, { "page": "dot-saveResultsToCSV", "title": "Saves the simulation results to csv file", "topics": [ ".saveResultsToCSV" ] }, { "page": "dot-saveSensitivityAnalysisResultsToCSV", "title": "Saves the simulation analysis results to csv file", "topics": [ ".saveSensitivityAnalysisResultsToCSV" ] }, { "page": "dot-scaleQuantityValues", "title": "Scale current values of quantities using a factor", "topics": [ ".scaleQuantityValues" ] }, { "page": "dot-setEndSimulationTime", "title": "Set end time of the simulation", "topics": [ ".setEndSimulationTime" ] }, { "page": "dot-setQuantityValues", "title": "Set values of quantity", "topics": [ ".setQuantityValues" ] }, { "page": "dot-validateHasUnit", "title": "Check if quantity can be represented in the unit", "topics": [ ".validateHasUnit" ] }, { "page": "addOutputInterval", "title": "Adds an interval to the output schema of the simulation", "topics": [ "addOutputInterval" ] }, { "page": "addOutputs", "title": "Adds the quantities as output into the 'simulation'. The quantities can either be specified using explicit instances or using paths.", "topics": [ "addOutputs" ] }, { "page": "addResidualColumn", "title": "Add a residual column to paired observed/predicted data", "concept": [ "data-combined" ], "topics": [ "addResidualColumn" ] }, { "page": "addUserDefinedPKParameter", "title": "Adds and returns a User-Defined PK-Parameter to the managed list of PK-Parameters", "topics": [ "addUserDefinedPKParameter" ] }, { "page": "AgingData", "title": "AgingData", "topics": [ "AgingData" ] }, { "page": "allAvailableDimensions", "title": "List all available dimensions in the 'OSPSuite' platform", "topics": [ "allAvailableDimensions" ] }, { "page": "allPKParameterNames", "title": "Returns the name of all pk parameters defined in the system", "topics": [ "allPKParameterNames" ] }, { "page": "Application", "title": "Application", "topics": [ "Application" ] }, { "page": "calculatePKAnalyses", "title": "Calculates the pkAnalyses for all output values available in 'results'.", "topics": [ "calculatePKAnalyses" ] }, { "page": "calculateResiduals", "title": "Calculate residuals for datasets in 'DataCombined'", "concept": [ "data-combined" ], "topics": [ "calculateResiduals" ] }, { "page": "clearMemory", "title": "Clears the memory used by all underlying objects", "topics": [ "clearMemory" ] }, { "page": "clearOutputIntervals", "title": "Removes all intervals as well as all single time points from the output schema defined in 'simulation'", "topics": [ "clearOutputIntervals" ] }, { "page": "clearOutputs", "title": "Removes all selected output from the given 'simulation'", "topics": [ "clearOutputs" ] }, { "page": "CompareBy", "title": "How should comparison of entities be performed", "topics": [ "CompareBy" ] }, { "page": "convertSnapshot", "title": "Convert between snapshot and project formats", "topics": [ "convertSnapshot" ] }, { "page": "convertUnits", "title": "Convert datasets in 'DataCombined' to common units", "concept": [ "data-combined" ], "topics": [ "convertUnits" ] }, { "page": "createDistributions", "title": "Creates the parameter distributions based on the given individual 'individualCharacteristics'", "topics": [ "createDistributions" ] }, { "page": "createImporterConfigurationForFile", "title": "Create a 'DataImporterConfiguration' for an XLS sheet", "topics": [ "createImporterConfigurationForFile" ] }, { "page": "createIndividual", "title": "Creates a set of parameter values describing an individual using the PK-Sim Database", "topics": [ "createIndividual" ] }, { "page": "createIndividualCharacteristics", "title": "Create the characteristics of an individual using the PK-Sim Database.", "topics": [ "createIndividualCharacteristics" ] }, { "page": "createPopulation", "title": "Creates an population using the PK-Sim Database", "topics": [ "createPopulation" ] }, { "page": "createPopulationCharacteristics", "title": "Creates the population characteristics used to create a population", "topics": [ "createPopulationCharacteristics" ] }, { "page": "createSimulationBatch", "title": "Creates and returns an instance of a 'SimulationBatch' that can be used to efficiently vary parameters and initial values in a simulation", "topics": [ "createSimulationBatch" ] }, { "page": "DataAggregationMethods", "title": "Names of aggregation available for plotPopulationTimeProfile()", "topics": [ "DataAggregationMethods" ] }, { "page": "DataColumn", "title": "DataColumn", "topics": [ "DataColumn" ] }, { "page": "DataCombined", "title": "Object combining simulated and observed data", "concept": [ "data-combined" ], "topics": [ "DataCombined" ] }, { "page": "dataCombinedAciclovir", "title": "dataCombinedAciclovir", "topics": [ "dataCombinedAciclovir" ] }, { "page": "DataErrorType", "title": "Supported types of the error", "topics": [ "DataErrorType" ] }, { "page": "DataImporterConfiguration", "title": "DataImporterConfiguration", "topics": [ "DataImporterConfiguration" ] }, { "page": "DataRepository", "title": "DataRepository", "topics": [ "DataRepository" ] }, { "page": "DataSet", "title": "DataSet", "topics": [ "DataSet" ] }, { "page": "dataSetsFromDataFrame", "title": "Creates a list of 'DataSet' objects from a 'data.frame'", "topics": [ "dataSetsFromDataFrame" ] }, { "page": "dataSetToDataFrame", "title": "Converts a list of 'DataSet' objects to a data.frame", "topics": [ "dataSetToDataFrame", "dataSetToTibble" ] }, { "page": "DefaultPlotConfiguration", "title": "Plot configuration for OSP plots", "concept": [ "plotting" ], "topics": [ "DefaultPlotConfiguration" ] }, { "page": "DotNetWrapper", "title": "Wrapper class for '.NET' objects", "topics": [ "DotNetWrapper" ] }, { "page": "Entity", "title": "Entity", "topics": [ "Entity" ] }, { "page": "exportIndividualSimulations", "title": "Export simulation PKMLs for given 'individualIds'. Each pkml file will contain the original simulation updated with parameters of the corresponding individual.", "topics": [ "exportIndividualSimulations" ] }, { "page": "exportPKAnalysesToCSV", "title": "Saves the pK-analyses to csv file", "topics": [ "exportPKAnalysesToCSV" ] }, { "page": "exportPopulationToCSV", "title": "Saves the population to csv file", "topics": [ "exportPopulationToCSV" ] }, { "page": "exportProjectToSnapshot", "title": "Export a project to a snapshot", "topics": [ "exportProjectToSnapshot" ] }, { "page": "exportResultsToCSV", "title": "Saves the simulation results to csv file", "topics": [ "exportResultsToCSV" ] }, { "page": "exportSensitivityAnalysisResultsToCSV", "title": "Saves the simulation analysis results to csv file", "topics": [ "exportSensitivityAnalysisResultsToCSV" ] }, { "page": "exportSteadyStateToXLS", "title": "Export steady-state to Excel in the format that can be imported in MoBi.", "topics": [ "exportSteadyStateToXLS" ] }, { "page": "Formula", "title": "Formula", "topics": [ "Formula", "TableFormula" ] }, { "page": "Gender", "title": "Default genders defined in PK-Sim", "topics": [ "Gender" ] }, { "page": "getAllContainerPathsIn", "title": "Retrieves the path of all containers defined in the container and all its children", "topics": [ "getAllContainerPathsIn" ] }, { "page": "getAllContainersMatching", "title": "Retrieve all sub containers of a parent container (simulation or container instance) matching the given path criteria", "topics": [ "getAllContainersMatching" ] }, { "page": "getAllMoleculePathsIn", "title": "Retrieves the paths of all molecules defined in the container and all its children", "topics": [ "getAllMoleculePathsIn" ] }, { "page": "getAllMoleculesMatching", "title": "Retrieve all molecules of a container (simulation or container instance) matching the given path criteria", "topics": [ "getAllMoleculesMatching" ] }, { "page": "getAllObserverPathsIn", "title": "Retrieves the path of all observers defined in the container and all its children", "topics": [ "getAllObserverPathsIn" ] }, { "page": "getAllParameterPathsIn", "title": "Retrieves the path of all parameters defined in the container and all its children", "topics": [ "getAllParameterPathsIn" ] }, { "page": "getAllParametersForSensitivityAnalysisMatching", "title": "Retrieve all parameters of the given simulation matching the given path criteria and also potential candidate for sensitivity variation", "topics": [ "getAllParametersForSensitivityAnalysisMatching" ] }, { "page": "getAllParametersMatching", "title": "Retrieve all parameters of a container (simulation or container instance) matching the given path criteria", "topics": [ "getAllParametersMatching" ] }, { "page": "getAllQuantitiesMatching", "title": "Retrieve all quantities of a container (simulation or container instance) matching the given path criteria", "topics": [ "getAllQuantitiesMatching" ] }, { "page": "getAllQuantityPathsIn", "title": "Retrieves the path of all quantities defined in the container and all its children", "topics": [ "getAllQuantityPathsIn" ] }, { "page": "getAllStateVariableParametersPaths", "title": "Get the paths of all state variable parameters of the simulation", "topics": [ "getAllStateVariableParametersPaths" ] }, { "page": "getAllStateVariablesPaths", "title": "Get the paths of all state variable quantities of the simulation", "topics": [ "getAllStateVariablesPaths" ] }, { "page": "getBaseUnit", "title": "Get base unit of a dimension", "topics": [ "getBaseUnit" ] }, { "page": "getContainer", "title": "Retrieve a single container by path under the given container", "topics": [ "getContainer" ] }, { "page": "getDimensionByName", "title": "Get dimension by name", "topics": [ "getDimensionByName" ] }, { "page": "getDimensionForUnit", "title": "Get dimension for a given unit", "topics": [ "getDimensionForUnit" ] }, { "page": "getMolecule", "title": "Retrieve a single molecule by path in the given container", "topics": [ "getMolecule" ] }, { "page": "getMolWeightFor", "title": "Retrieve molecular weight for a quantity's molecule", "topics": [ "getMolWeightFor" ] }, { "page": "getOSPSuiteSetting", "title": "Get the value of a global ospsuite-R setting.", "topics": [ "getOSPSuiteSetting" ] }, { "page": "getOutputValues", "title": "Extracting simulated values", "topics": [ "getOutputValues" ] }, { "page": "getParameter", "title": "Retrieve a single parameter by path in the given container", "topics": [ "getParameter" ] }, { "page": "getParameterDisplayPaths", "title": "Retrieves the display path of the parameters defined by paths in the simulation", "topics": [ "getParameterDisplayPaths" ] }, { "page": "getQuantity", "title": "Retrieve a single quantity by path in the given container", "topics": [ "getQuantity" ] }, { "page": "getQuantityValuesByPath", "title": "Get the values of quantities in the simulation by path", "topics": [ "getQuantityValuesByPath" ] }, { "page": "getSimulationTree", "title": "Get simulation tree", "topics": [ "getSimulationTree" ] }, { "page": "getStandardMoleculeParameters", "title": "Returns a list containing all standard global parameters defined in a 'simulation' for given 'moleculeName'. These parameters are typically located directly under the container named after the 'moleculeName'. For the list of standard parameters", "topics": [ "getStandardMoleculeParameters" ] }, { "page": "getSteadyState", "title": "Get the steady-state values of species and state variable parameters.", "topics": [ "getSteadyState" ] }, { "page": "getUnitsForDimension", "title": "Get units for a given dimension", "topics": [ "getUnitsForDimension" ] }, { "page": "hasDimension", "title": "Dimension existence", "topics": [ "hasDimension" ] }, { "page": "hasUnit", "title": "Unit existence", "topics": [ "hasUnit" ] }, { "page": "HumanPopulation", "title": "Default human population defined in PK-Sim", "topics": [ "HumanPopulation" ] }, { "page": "importPKAnalysesFromCSV", "title": "Loads the pK-analyses from csv file", "topics": [ "importPKAnalysesFromCSV" ] }, { "page": "importResultsFromCSV", "title": "Imports the simulation results from one or more csv files", "topics": [ "importResultsFromCSV" ] }, { "page": "importSensitivityAnalysisResultsFromCSV", "title": "Imports the simulation analysis results from one or more csv files", "topics": [ "importSensitivityAnalysisResultsFromCSV" ] }, { "page": "IndividualCharacteristics", "title": "IndividualCharacteristics", "topics": [ "IndividualCharacteristics" ] }, { "page": "initPKSim", "title": "Loads the 'PKSim.R' dll that will enable create individual and create population workflows.", "topics": [ "initPKSim" ] }, { "page": "isExplicitFormulaByPath", "title": "Is the value defined by an explicit formula", "topics": [ "isExplicitFormulaByPath" ] }, { "page": "isSupportedUnit", "title": "Check if unit is supported in the OSPSuite platform", "topics": [ "isSupportedUnit" ] }, { "page": "loadAgingDataFromCSV", "title": "Loads aging data (typically generated from PK-Sim) i", "topics": [ "loadAgingDataFromCSV" ] }, { "page": "loadDataImporterConfiguration", "title": "Load 'DataImporterConfiguration' from XML file.", "topics": [ "loadDataImporterConfiguration" ] }, { "page": "loadDataSetFromPKML", "title": "Loads data (typically observed data) from a PKML file and creates a 'DataSet' from it. The pkml files are typically exported from PK-Sim or MoBi.", "topics": [ "loadDataSetFromPKML" ] }, { "page": "loadDataSetsFromExcel", "title": "Load data sets from excel", "topics": [ "loadDataSetsFromExcel" ] }, { "page": "loadPopulation", "title": "Loads a population from a csv file and returns the population.", "topics": [ "loadPopulation" ] }, { "page": "loadProjectFromSnapshot", "title": "Load a project from a snapshot", "topics": [ "loadProjectFromSnapshot" ] }, { "page": "loadSimulation", "title": "Load a simulation from a pkml file", "topics": [ "loadSimulation" ] }, { "page": "messages", "title": "List of functions and strings used to signal error messages Extends the 'messages' list from ospsuite.utils", "topics": [ "messages" ] }, { "page": "MoleculeOntogeny", "title": "MoleculeOntogeny", "topics": [ "MoleculeOntogeny" ] }, { "page": "MoleculeParameter", "title": "Standard molecule parameter names typically available in an endogenous molecule (enzyme, transporter etc...) coming from PK-Sim", "topics": [ "MoleculeParameter" ] }, { "page": "ospDimensions", "title": "Supported dimensions defined as a named list", "topics": [ "ospDimensions" ] }, { "page": "ospsuite_deprecated", "title": "Deprecated functions", "topics": [ "ospsuite_deprecated", "pkAnalysesAsDataFrame", "populationAsDataFrame" ] }, { "page": "ospsuiteSettingNames", "title": "Names of the settings stored in ospsuiteEnv. Can be used with 'getOSPSuiteSetting()'", "topics": [ "ospsuiteSettingNames" ] }, { "page": "ospUnits", "title": "Supported units defined as a named list of lists", "topics": [ "ospUnits" ] }, { "page": "OutputSchema", "title": "OutputSchema", "topics": [ "OutputSchema" ] }, { "page": "OutputSelections", "title": "OutputSelections", "topics": [ "OutputSelections" ] }, { "page": "Parameter", "title": "Parameter", "topics": [ "Parameter" ] }, { "page": "ParameterRange", "title": "ParameterRange", "topics": [ "ParameterRange" ] }, { "page": "pkAnalysesToDataFrame", "title": "Convert the pk-Analysis to data frame", "topics": [ "pkAnalysesToDataFrame", "pkAnalysesToTibble" ] }, { "page": "PKParameter", "title": "PKParameter", "topics": [ "PKParameter" ] }, { "page": "pkParameterByName", "title": "Returns an instance of a PK-Parameter by name or NULL if the parameter by name is not found", "topics": [ "pkParameterByName" ] }, { "page": "PKParameterSensitivity", "title": "PKParameterSensitivity", "topics": [ "PKParameterSensitivity" ] }, { "page": "plotIndividualTimeProfile", "title": "Time-profile plot of individual data", "concept": [ "plotting" ], "topics": [ "plotIndividualTimeProfile" ] }, { "page": "plotObservedVsSimulated", "title": "Observed versus predicted/simulated scatter plot", "concept": [ "plotting" ], "topics": [ "plotObservedVsSimulated" ] }, { "page": "plotPopulationTimeProfile", "title": "Time-values profile plot for population simulations", "concept": [ "plotting" ], "topics": [ "plotPopulationTimeProfile" ] }, { "page": "plotPredictedVsObserved", "title": "Plot Predicted vs Observed Values", "concept": [ "plot functions based on ospsuite.plots" ], "topics": [ "plotPredictedVsObserved" ] }, { "page": "plotQuantileQuantilePlot", "title": "Plot Quantile-Quantile Plot", "concept": [ "plot functions based on ospsuite.plots" ], "topics": [ "plotQuantileQuantilePlot" ] }, { "page": "plotResidualsAsHistogram", "title": "Plot Residuals Histogram", "concept": [ "plot functions based on ospsuite.plots" ], "topics": [ "plotResidualsAsHistogram" ] }, { "page": "plotResidualsVsCovariate", "title": "Plot Residuals vs Covariate", "concept": [ "plot functions based on ospsuite.plots" ], "topics": [ "plotResidualsVsCovariate" ] }, { "page": "plotResidualsVsSimulated", "title": "Residuals versus time scatter plot", "concept": [ "plotting" ], "topics": [ "plotResidualsVsSimulated" ] }, { "page": "plotResidualsVsTime", "title": "Residuals versus time scatter plot", "concept": [ "plotting" ], "topics": [ "plotResidualsVsTime" ] }, { "page": "plotTimeProfile", "title": "Create Time Profile Plot", "concept": [ "plot functions based on ospsuite.plots" ], "topics": [ "plotTimeProfile" ] }, { "page": "Population", "title": "Population", "topics": [ "Population" ] }, { "page": "PopulationCharacteristics", "title": "PopulationCharacteristics", "topics": [ "PopulationCharacteristics" ] }, { "page": "populationFromDataFrame", "title": "Creates a 'Population' object from a data.frame", "topics": [ "populationFromDataFrame" ] }, { "page": "populationToDataFrame", "title": "Creates a data.frame containing one column for each parameter defined in the population", "topics": [ "populationToDataFrame", "populationToTibble" ] }, { "page": "potentialVariableParameterPathsFor", "title": "Returns an array of parameter path with one entry for each parameter that is used in the simulation and can potentially be used for sensitivity analysis", "topics": [ "potentialVariableParameterPathsFor" ] }, { "page": "Quantity", "title": "Quantity", "topics": [ "Quantity" ] }, { "page": "QuantityPKParameter", "title": "QuantityPKParameter", "topics": [ "QuantityPKParameter" ] }, { "page": "QuantitySelection", "title": "QuantitySelection", "topics": [ "QuantitySelection" ] }, { "page": "removeAllUserDefinedPKParameters", "title": "Removes all User-Defined PK-Parameters that may have been added to the system", "topics": [ "removeAllUserDefinedPKParameters" ] }, { "page": "removeSimulationFromCache", "title": "Removes a simulation from simulations cache.", "topics": [ "removeSimulationFromCache" ] }, { "page": "resetSimulationCache", "title": "Clears cache of loaded simulations", "topics": [ "resetSimulationCache" ] }, { "page": "runSensitivityAnalysis", "title": "Runs a sensitivity analysis", "topics": [ "runSensitivityAnalysis" ] }, { "page": "runSimulationBatches", "title": "Run simulation batches", "topics": [ "runSimulationBatches" ] }, { "page": "runSimulations", "title": "Runs multiple simulations concurrently.", "topics": [ "runSimulations" ] }, { "page": "runSimulationsFromSnapshot", "title": "Run Simulations From Snapshot Files", "topics": [ "runSimulationsFromSnapshot" ] }, { "page": "saveDataSetToPKML", "title": "Save the 'DataSet' to pkml", "topics": [ "saveDataSetToPKML" ] }, { "page": "saveSimulation", "title": "Saves a simulation to pkml file", "topics": [ "saveSimulation" ] }, { "page": "scaleParameterValues", "title": "Scale current values of parameters using a factor", "topics": [ "scaleParameterValues" ] }, { "page": "SensitivityAnalysis", "title": "SensitivityAnalysis", "topics": [ "SensitivityAnalysis" ] }, { "page": "SensitivityAnalysisResults", "title": "SensitivityAnalysisResults", "topics": [ "SensitivityAnalysisResults" ] }, { "page": "SensitivityAnalysisRunOptions", "title": "SensitivityAnalysisRunOptions", "topics": [ "SensitivityAnalysisRunOptions" ] }, { "page": "setMoleculeInitialValues", "title": "Set molecule start values", "topics": [ "setMoleculeInitialValues" ] }, { "page": "setMoleculeScaleDivisors", "title": "Set molecule scale divisors", "topics": [ "setMoleculeScaleDivisors" ] }, { "page": "setMoleculeValuesByPath", "title": "Set molecule start values in the simulation by path", "topics": [ "setMoleculeValuesByPath" ] }, { "page": "setOutputInterval", "title": "Clears the output interval from the simulation and adds a new one.", "topics": [ "setOutputInterval" ] }, { "page": "setOutputs", "title": "Set outputs of a simulation", "topics": [ "setOutputs" ] }, { "page": "setParameterValues", "title": "Set values of parameters", "topics": [ "setParameterValues" ] }, { "page": "setParameterValuesByPath", "title": "Set the values of parameters in the simulation by path", "topics": [ "setParameterValuesByPath" ] }, { "page": "setQuantityValuesByPath", "title": "Set the values of quantities in the simulation by path", "topics": [ "setQuantityValuesByPath" ] }, { "page": "Simulation", "title": "Simulation", "topics": [ "Simulation" ] }, { "page": "SimulationBatch", "title": "SimulationBatch", "topics": [ "SimulationBatch" ] }, { "page": "SimulationBatchOptions", "title": "SimulationBatchOptions", "topics": [ "SimulationBatchOptions" ] }, { "page": "SimulationBatchRunValues", "title": "SimulationBatchRunValues", "topics": [ "SimulationBatchRunValues" ] }, { "page": "SimulationPKAnalyses", "title": "SimulationPKAnalyses", "topics": [ "SimulationPKAnalyses" ] }, { "page": "SimulationResults", "title": "SimulationResults", "topics": [ "SimulationResults" ] }, { "page": "simulationResultsToDataFrame", "title": "Converts a 'SimulationResults' objects to a data.frame", "topics": [ "simulationResultsToDataFrame", "simulationResultsToTibble" ] }, { "page": "SimulationRunOptions", "title": "SimulationRunOptions", "topics": [ "SimulationRunOptions" ] }, { "page": "SimulationSettings", "title": "SimulationSettings", "topics": [ "SimulationSettings" ] }, { "page": "SnapshotParameter", "title": "SnapshotParameter", "topics": [ "SnapshotParameter" ] }, { "page": "SolverSettings", "title": "SolverSettings", "topics": [ "SolverSettings" ] }, { "page": "Species", "title": "Default species defined in PK-Sim", "topics": [ "Species" ] }, { "page": "splitPopulationFile", "title": "Loads a population from the 'csvPopulationFile' and split the loaded population according to 'numberOfCores'.", "topics": [ "splitPopulationFile" ] }, { "page": "StandardContainer", "title": "Standard containers typically available in a PBPK simulation", "topics": [ "StandardContainer" ] }, { "page": "StandardOntogeny", "title": "List of ontogeny supported in PK-Sim", "topics": [ "StandardOntogeny" ] }, { "page": "StandardPath", "title": "Standard parameter paths typically available in a PBPK simulation", "topics": [ "StandardPath" ] }, { "page": "StandardPKParameter", "title": "Standard PK-Parameters types defined in OSPSuite This is only used to defined how a user defined PK Parameter should be calculated", "topics": [ "StandardPKParameter" ] }, { "page": "toBaseUnit", "title": "Converts a value given in a specified unit into the base unit of a quantity", "topics": [ "toBaseUnit" ] }, { "page": "toDisplayUnit", "title": "Convert base unit to display unit", "topics": [ "toDisplayUnit" ] }, { "page": "toPathArray", "title": "Convert a path defined as string to a path array", "topics": [ "toPathArray" ] }, { "page": "toPathString", "title": "Convert a path array to a path as string with entries separated by '|'", "topics": [ "toPathString" ] }, { "page": "toUnit", "title": "Converts values from one unit to another", "topics": [ "toUnit" ] }, { "page": "uniqueEntities", "title": "Extract Unique Elements of type 'Entity'", "topics": [ "uniqueEntities" ] }, { "page": "updatePKParameter", "title": "Updates some properties of a PK-Parameter (displayName and displayUnit)", "topics": [ "updatePKParameter" ] }, { "page": "UserDefinedPKParameter", "title": "UserDefinedPKParameter", "topics": [ "UserDefinedPKParameter" ] }, { "page": "validateDimension", "title": "Validate dimension", "topics": [ "validateDimension" ] }, { "page": "validateIsNamedList", "title": "Validate that an object is a named list", "topics": [ "validateIsNamedList" ] }, { "page": "validateUnit", "title": "Validate unit", "topics": [ "validateUnit" ] }, { "page": "ValuePoint", "title": "ValuePoint", "topics": [ "ValuePoint" ] } ], "_readme": 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