Package: ospsuite.parameteridentification 2.2.0

Pavel Balazki

ospsuite.parameteridentification: Open Systems Pharmacology Parameter Identification package

R package for performing parameter identification for the Open Systems Pharmacology models.

Authors:Open-Systems-Pharmacology Community [cph], esqLABS GmbH [fnd], Pavel Balazki [aut, cre], Rudi Engelke [aut], Sergei Vavilov [ctb], Felix Mil [ctb]

ospsuite.parameteridentification_2.2.0.tar.gz
ospsuite.parameteridentification_2.2.0.zip(r-4.7-any)ospsuite.parameteridentification_2.2.0.zip(r-4.6-any)ospsuite.parameteridentification_2.2.0.zip(r-4.5-any)
ospsuite.parameteridentification_2.2.0.tgz(r-4.6-any)ospsuite.parameteridentification_2.2.0.tgz(r-4.5-any)
ospsuite.parameteridentification_2.2.0.tar.gz(r-4.7-any)ospsuite.parameteridentification_2.2.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ospsuite.parameteridentification/json (API)

# Install 'ospsuite.parameteridentification' in R:
install.packages('ospsuite.parameteridentification', repos = c('https://open-systems-pharmacology.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/open-systems-pharmacology/ospsuite.parameteridentification/issues

Pkgdown/docs site:https://www.open-systems-pharmacology.org

On CRAN:

Conda:

4.78 score 3 stars 1 packages 13 scripts 22 exports 77 dependencies

Last updated from:cb9e9e5859 (on v2.2.0). Checks:5 ERROR, 3 WARNING, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR175
source / vignettesERROR248
linux-releaseERROR152
macos-releaseERROR149
macos-oldrelERROR100
windows-develWARNING361
windows-releaseWARNING366
windows-oldrelWARNING291
wasm-releaseFAIL150

Exports:AlgorithmDefaultsAlgorithmOptions_BOBYQAAlgorithmOptions_DEoptimAlgorithmOptions_HJKBAlgorithmsCIDefaultsCIMethodsCIOptions_bootstrapCIOptions_hessianCIOptions_PLgetOSPSuitePISettingObjectiveFunctionOptionsospsuitePIRSettingNamesParameterIdentificationPIConfigurationPIOutputMappingPIParametersPKOutputMappingplotOFVProfilesresidualWeightingOptionsrobustMethodOptionsScalingOptions

Dependencies:backportsbitbit64checkmateclicliprcommonmarkcowplotcpp11crayoncurldata.tableDEoptimdfoptimDiceKrigingdplyrfarverfitdistrplusfsgenericsggh4xggnewscaleggplot2ggtextgluegridtextgtablehmsisobandjpegjsonlitelabelinglatticelifecyclelitedownloggermagrittrmarkdownMASSMatrixnloptrnumDerivopenxlsxospsuiteospsuite.plotsospsuite.utilspatchworkpillarpkgconfigpngprettyunitsprogresspurrrR6RColorBrewerRcppreadrrlangrSharpS7scalesstringistringrsurvivaltibbletidyrtidyselecttlftzdbutf8vctrsviridisLitevroomwithrxfunxml2zip

Readme and manuals

Help Manual

Help pageTopics
Algorithm Options for Optimization AlgorithmsAlgorithmDefaults AlgorithmOptions AlgorithmOptions_BOBYQA AlgorithmOptions_DEoptim AlgorithmOptions_HJKB
Optimization AlgorithmsAlgorithms
Confidence Interval Estimation MethodsCIMethods
Confidence Interval Estimation OptionsCIDefaults CIOptions CIOptions_bootstrap CIOptions_hessian CIOptions_PL
Get the value of a global ospsuite.parameteridentification setting.getOSPSuitePISetting
Objective Function Options for Model Fit AssessmentObjectiveFunctionOptions
Names of the settings stored in piEnv Can be used with 'getOSPSuitePISetting()'ospsuitePIRSettingNames
ParameterIdentificationParameterIdentification
PIConfigurationPIConfiguration
PIOutputMappingPIOutputMapping
PIParametersPIParameters
PKOutputMappingPKOutputMapping
Plot Model Cost Residualsplot.modelCost
Plot Objective Function Value (OFV) ProfilesplotOFVProfiles
Residual Weighting Methods for Cost FunctionresidualWeightingOptions
Robust Weighting Methods for Cost FunctionrobustMethodOptions
Scaling Options for Output MappingScalingOptions