Package: ospsuite.parameteridentification 2.2.0

Pavel Balazki

ospsuite.parameteridentification: Open Systems Pharmacology Parameter Identification package

R package for performing parameter identification for the Open Systems Pharmacology models.

Authors:Open-Systems-Pharmacology Community [cph], esqLABS GmbH [fnd], Pavel Balazki [aut, cre], Rudi Engelke [aut], Sergei Vavilov [ctb], Felix Mil [ctb]

ospsuite.parameteridentification_2.2.0.tar.gz
ospsuite.parameteridentification_2.2.0.zip(r-4.7)ospsuite.parameteridentification_2.2.0.zip(r-4.6)ospsuite.parameteridentification_2.2.0.zip(r-4.5)
ospsuite.parameteridentification_2.2.0.tgz(r-4.6-any)ospsuite.parameteridentification_2.2.0.tgz(r-4.5-any)
ospsuite.parameteridentification_2.2.0.tar.gz(r-4.7-any)ospsuite.parameteridentification_2.2.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ospsuite.parameteridentification/json (API)

# Install 'ospsuite.parameteridentification' in R:
install.packages('ospsuite.parameteridentification', repos = c('https://open-systems-pharmacology.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/open-systems-pharmacology/ospsuite.parameteridentification/issues

Pkgdown/docs site:https://www.open-systems-pharmacology.org

On CRAN:

Conda:

4.87 score 3 stars 1 packages 13 scripts 22 exports 77 dependencies

Last updated from:cb9e9e5859 (on v2.2.0). Checks:5 ERROR, 3 WARNING, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR182
source / vignettesERROR361
linux-release-x86_64ERROR216
macos-release-arm64ERROR90
macos-oldrel-arm64ERROR94
windows-develWARNING369
windows-releaseWARNING377
windows-oldrelWARNING372
wasm-releaseFAIL286

Exports:AlgorithmDefaultsAlgorithmOptions_BOBYQAAlgorithmOptions_DEoptimAlgorithmOptions_HJKBAlgorithmsCIDefaultsCIMethodsCIOptions_bootstrapCIOptions_hessianCIOptions_PLgetOSPSuitePISettingObjectiveFunctionOptionsospsuitePIRSettingNamesParameterIdentificationPIConfigurationPIOutputMappingPIParametersPKOutputMappingplotOFVProfilesresidualWeightingOptionsrobustMethodOptionsScalingOptions

Dependencies:backportsbitbit64checkmateclicliprcommonmarkcowplotcpp11crayoncurldata.tableDEoptimdfoptimDiceKrigingdplyrfarverfitdistrplusfsgenericsggh4xggnewscaleggplot2ggtextgluegridtextgtablehmsisobandjpegjsonlitelabelinglatticelifecyclelitedownloggermagrittrmarkdownMASSMatrixnloptrnumDerivopenxlsxospsuiteospsuite.plotsospsuite.utilspatchworkpillarpkgconfigpngprettyunitsprogresspurrrR6RColorBrewerRcppreadrrlangrSharpS7scalesstringistringrsurvivaltibbletidyrtidyselecttlftzdbutf8vctrsviridisLitevroomwithrxfunxml2zip

Readme and manuals

Help Manual

Help pageTopics
Algorithm Options for Optimization AlgorithmsAlgorithmDefaults AlgorithmOptions AlgorithmOptions_BOBYQA AlgorithmOptions_DEoptim AlgorithmOptions_HJKB
Optimization AlgorithmsAlgorithms
Confidence Interval Estimation MethodsCIMethods
Confidence Interval Estimation OptionsCIDefaults CIOptions CIOptions_bootstrap CIOptions_hessian CIOptions_PL
Get the value of a global ospsuite.parameteridentification setting.getOSPSuitePISetting
Objective Function Options for Model Fit AssessmentObjectiveFunctionOptions
Names of the settings stored in piEnv Can be used with 'getOSPSuitePISetting()'ospsuitePIRSettingNames
ParameterIdentificationParameterIdentification
PIConfigurationPIConfiguration
PIOutputMappingPIOutputMapping
PIParametersPIParameters
PKOutputMappingPKOutputMapping
Plot Model Cost Residualsplot.modelCost
Plot Objective Function Value (OFV) ProfilesplotOFVProfiles
Residual Weighting Methods for Cost FunctionresidualWeightingOptions
Robust Weighting Methods for Cost FunctionrobustMethodOptions
Scaling Options for Output MappingScalingOptions